Syed Beenish Rufai
Ramanujan Fellow
IIIM (Br) Srinagar Division
CSIR – Indian Institute of Integrative Medicine, Branch Lab, Srinagar
Email: beenish.syed@iiim.res.in
Bio Sketch
Beenish is a microbiologist by training, with a background in mycobacteriology. She received her PhD at All India Institute of Medical Sciences, Delhi investigating epidemiology & transmission of extensively drug resistant (XDR) TB strains in India, followed by Senior Residency in Department of Microbiology at All India Institute of Medical Sciences Bhopal.
Later she pursued her postdoctoral research at McGill university Health Centre studying several facets like biology, genomic and proteomic characterization of Mycobacterium orygis.
Until recently, she joined as Ramanjan Fellow at CSIR IIIM after being awarded the fellowship by Department of Science and technology, Science and Engineering board (Govt. Of India).
Research statement:
Current research is focused on two main areas:
(i) Comparative genomics (pangenome) to study accessory genes/coding sequences among hypervirulent strains/drug resistant strain of Mycobcaterium tuberculosis. Long term plans include elucidating the function characteristic of such genes/coding sequences, understanding mechanisms of drug resistance and further to do gene-knockouts to look for their role in host pathogen interactions.
ii) Understanding biology and characterization of outer membrane vesicles (OMV’s) released by members of Mycobacterium tuberculosis complex. I will be looking for role of these OMV’s for generation of cell-mediated responses in mice models and whether it will result in a significant Th1 imprint that can persist following high dose M. tuberculosis challenge in mice models. Long term plan includes understanding multiple pathways of OMV’s that promote bacteria survival in host.
Education
Degree | Subjects | University | Qualifying Year |
PhD | Clinical Microbiology (Mycobacteriology) |
All India Institute of Medical Sciences Delhi | 2018 |
MSc | Microbiology | HNB Garhwal University, Uttarakhand | 2011 |
BSc | Medical Microbiology | HNB Garhwal University, Uttarakhand | 2009 |
Position Held
Position Held | Period | Organization |
Ramalingaswami Fellow | February 2022 till now | CSIR-Institute of Integrative Medicine |
Posdoctoral research associate | March 2020-January 2022 | McGill University Health Centre |
Area of Expertise
- Epidemiology & transmission of Mycobacterium tuberculosis complex, structural genomics, (sequencing and analysis of microbial genomes); functional genomics (transcriptome andproteomics); comparative genome analysis (pangenome), computational biology and Microbial immunology.
Projects
- Bioengineering membrane vesicles in Mycobacterium bovis BCG strain as an antigen exhibitplatform for tuberculosis vaccination funded by DST SERB India.
Publications
Authors | Title | Journal |
Rufai SB, McIntosh F, Poojary I, Chothe S, Sebastian A, Albert I,Praul C, Venkatesan M, Mahata G, Maity H, Dandapat P, MichaelJS, Katani R, Kapur V, Behr MA*. | Complete Genome Sequence of Mycobacterium orygis Strain 51145. | Microbiol Resour Announc. 2021. doi:10.1128/MRA.01279-20 |
PK Singh, U Kulsum, SB Rufai, Mudhliar RS, Singh S 12(2): 154–160. | Mutations in SARS-CoV- Leading to Antigenic Variations in Spike Protein Lab Physicians. 2020 Aug; 12(2): 154–160. | J Lab Physicians. 2020 Aug;12(2): 154–160. |
Rufai SB, U Kulsum, PK Singh, Singh S. | Performance of Genotype MTBDRsl V2.0 over the Genotype MTBDRsl V1 for detection of second line drug resistance: An Indian perspective. | PloS one, 2020 |
Rufai SB, Singh S* | Whole Genome Sequencing of XDR-TB isolates from India. | Microbial Resource Announcement. Feb (2019) DOI: 10.1128/MRA.00007-19 |
Rufai SB, Singh J, Kumar P, Mathur P, Singh S*. | Association of gyrA and rrs gene mutations detected by MTBDRsl V1 on Mycobacterium tuberculosis strains of diverse genetic background from India | Nature Scien rep. Jun (2018) 8:929. |
Rufai SB, Singh A, Singh J, Kumar P, Sankar MM, Singh S* | Diagnostic usefulness of Xpert MTB/RIF assay for detection of tuberculous meningitis using cerebrospinal fluid. | J Infect. 2017 Aug; 75(2): 125-131. |
Rufai SB, Singh S*, Singh A, Kumar P, Singh J, Vishal A. | Performance of Xpert MTB/RIF on Ascitic Fluid Samples for Detection of Abdominal Tuberculosis. |
J Lab Physicians. 2017 Jan-Mar; 9(1): 47-52. |
Rufai SB, Singh A, Kumar P, Singh J, Singh S* | Performance of Xpert MTB/RIF Assay in Diagnosis of Pleural Tuberculosis by Use of Pleural Fluid Samples | J Clin Microbiol. 2015 Nov; 53(11): 3636-8. |
Singh S*, Rufai SB, Kumar P, Singh J. | Reply to “molecular diagnosis of rifampin mono-resistant tuberculosis in Indian patients: problems with a discordance analysis | J. Clin Microbiol. 2014 Sep; 52(9): 3504-5. |
Rufai SB, Kumar P, Singh A, Prajapati S, Balooni V, Singh S*. | Comparison of Xpert MTB/RIF with line probe assay for detection of rifampin-monoresistant Mycobacterium tuberculosis. | J Clin Microbiol. 2014 Jun; 52(6): 1846-52 |
Kumar P, Beenish R, Singh SS*. | Heat fixed but unstained slide smears are infectious for Laboratory staff. | Heat fixed but unstained slide smears are infectious for Laboratory staff. |
Awards and Honours
- Prestigious Ramanujan Fellowship grant in Life Sciences Govt of India
Students
NIL